This function constructs the immunization date per individual
by searching for the vaccine dates that satisfy the condition:
vacc_date_col + immunization_delay <= limit_date
, where
limit_date
is defined following the hierarchy:
censoring_date_col
, outcome_date_col
, end_cohort
. If a date is not
provided/found the function takes the next one in the hierarchy.
If several columns with vaccine dates are provided, the function selects
by default the closest vaccine date to limit_date
. However, it can also
select the first vaccine date by setting take_first = TRUE
.
Usage
get_immunization_date(
data_set,
outcome_date_col,
censoring_date_col,
immunization_delay,
vacc_date_col,
end_cohort,
take_first = FALSE
)
Arguments
- data_set
data.frame
with cohort information.- outcome_date_col
Name of the column that contains the outcome dates.
- censoring_date_col
Name of the column that contains the censoring date.
- immunization_delay
Characteristic time in days before the patient is considered immune.
- vacc_date_col
Name of the column(s) that contain the vaccine dates.
- end_cohort
End date of the study.
- take_first
FALSE
: takes the latest vaccine date.TRUE
: takes the earliest vaccine date.