Branching processes
Simulate branching processes
-
chain_sim()
- Simulate transmission chains using a branching process
-
chain_sim_susc()
- Simulate a single chain using a branching process while accounting
for depletion of susceptibles.
Likelihood calculations
Estimate likelihoods
-
chain_ll()
- Calculate the log-likelihood for the outcome of a branching process
Reparametrized distributions
-
dborel()
- Density of the Borel distribution
-
rborel()
- Random number generator from the Borel distribution
-
rnbinom_mean_disp()
- Negative binomial random numbers parametrized
in terms of mean and dispersion coefficient
-
covid19_sa
- COVID-19 Data Repository for South Africa