Citations of Epiverse as a project
- Lipsitch M, Bassett MT, Brownstein JS, Elliott P, Eyre D, Grabowski MK, Hay JA, Johansson MA, Kissler SM, Larremore DB, Layden JE, Lessler J, Lynfield R, MacCannell D, Madoff LC, Metcalf CJE, Meyers LA, Ofori SK, Quinn C, Bento AI, Reich NG, Riley S, Rosenfeld R, Samore MH, Sampath R, Slayton RB, Swerdlow DL, Truelove S, Varma JK, Grad YH (2024). “Infectious disease surveillance needs for the United States: lessons from Covid-19.” Frontiers in Public Health, 12. ISSN 2296-2565, doi:10.3389/fpubh.2024.1408193.
- Fletcher I, The Wellcome Trust (2024). “Co-Designing the Foundations of a Climate Sensitive Infectious Disease Community of Practice [version 1; not peer reviewed].” Wellcome Open Res, 9(92). doi:10.21955/WELLCOMEOPENRES.1115376.1.
- The Wellcome Trust (2024). “Detection & Attribution of Climate Change Impacts on Human Health [version 1; not peer reviewed].” Wellcome Open Res, 9(245), 245. doi:10.21955/wellcomeopenres.1115387.1.
- Morgan O, Redies I, Rioja ZBL, Brownstein J, George D, Golding J, Hanefeld J, Horby P, Lee C, Mikhailov D, Philip W, Scarpino S, Tessema SK, Ihekweazu C (2022). “Innovations in public health surveillance: updates from a forum convened by the WHO Hub for Pandemic and Epidemic Intelligence, 2 and 3 February 2022.” Eurosurveillance, 27(15). doi:10.2807/1560-7917.ES.2022.27.15.2200302.
Package citations
bpmodels
- Whittaker C, Barnsley G, Olivera Mesa D, Laydon DJ, Tan CW, Zhu F, Johnson R, Doohan P, Nedjati-Gilani G, Winskill P, Hogan AB, Deol A, Mukandavire C, Hauck K, Lye DCB, Wang L, Watson OJ, Ghani AC (2024). “Quantifying the impact of a broadly protective sarbecovirus vaccine in a future SARS-X pandemic.” medRxiv. doi:10.1101/2024.08.12.24311730, https://www.medrxiv.org/content/early/2024/08/12/2024.08.12.24311730.full.pdf, https://www.medrxiv.org/content/early/2024/08/12/2024.08.12.24311730.
cfr
- Nilles EJ, Paulino CT, de St. Aubin M, Restrepo AC, Mayfield H, Dumas D, Finch E, Garnier S, Etienne MC, Iselin L, Duke W, Jarolim P, Oasan T, Yu J, Wan H, Peña F, Iihoshi N, Abdalla G, Lopez B, Cruz Ldl, Henríquez B, Espinosa-Bode A, Puello YC, Durski K, Baldwin M, Baez AA, Merchant RC, Barouch DH, Skewes-Ramm R, Gutiérrez EZ, Kucharski A, Lau CL (2022). “SARS-CoV-2 seroprevalence, cumulative infections, and immunity to symptomatic infection – A multistage national household survey and modelling study, Dominican Republic, June–October 2021.” The Lancet Regional Health – Americas, 16. ISSN 2667-193X, doi:10.1016/j.lana.2022.100390, Publisher: Elsevier, 2023-12-06.
epidemics
- Zeina Jamaluddine, Zhixi Chen, Hanan Abukmail, Sarah Aly, Shatha Elnakib, Gregory Barnsley, Fiona Majorin, Hannha Tong, Tak Igusa, Oona MR Campbell, Paul B. Spiegel, Francesco Checchi, the Gaza Health Impact Projections Working Group (2024). “Crisis in Gaza: Scenario-based Health Impact Projections.” Technical Report Report One: 7 February to 6 August 2024, London School of Hygiene and Tropical Medicine, Johns Hopkins University. https://gaza-projections.org/gaza_projections_report.pdf.
epiparameter
- Charniga K, Park SW, Akhmetzhanov AR, Cori A, Dushoff J, Funk S, Gostic KM, Linton NM, Lison A, Overton CE, Pulliam JRC, Ward T, Cauchemez S, Abbott S (2024). “Best practices for estimating and reporting epidemiological delay distributions of infectious diseases using public health surveillance and healthcare data.” arXiv preprint. doi:10.48550/arXiv.2405.08841.
finalsize
- Loster R (2024). Building a Framework for Assessing Policy Compliance and Efficacy in One Health: Insights From a COVID-19 Case Study. Master’s thesis, University of Guelph. https://mathstat.uoguelph.ca/node/592.
serofoi
- Menezes A, Takahashi S, Routledge I, Metcalf CJE, Graham AL, Hay JA (2023). “serosim: An R package for simulating serological data arising from vaccination, epidemiological and antibody kinetics processes.” PLOS Computational Biology, 19(8), 1-25. doi:10.1371/journal.pcbi.1011384.
- Hay J, Routledge I, Takahashi S (2023). “Serodynamics: a review of methods for epidemiological inference using serological data.” OSF Preprints. doi:10.31219/osf.io/kqdsn.