Getting started

Our aim is to help change how analytics are used in the global infectious disease response, moving towards integrated, generalisable and scalable community-driven software.

Roadmap

Epiverse-TRACE packages

These are built on methods and analysis that have informed epidemic response to infections including cholera, COVID, dengue, diphtheria, Ebola, influenza, and Zika.

Early tasks

Middle tasks

Late tasks

Tools for reading data

Open data for Colombia

Tools for cleaning data

Simulate outbreak data

Tagging and validating individual data

Tools for epidemiological parameters

Automated report for SIVIGILA data

Pipelines for common tasks

Severity estimation

Estimate force of infection from serology

Tools for vector-borne infections

Simulate vector-borne outbreaks

Simulation and analysis of transmission chains

Analysis of transmission variation

Calculate epidemic final size

Simulate epidemic dynamics

Analyze vaccine efficacy