library(superspreading)
We are very excited to announce the release of a new superspreading version v0.2.0. Here is an automatically generated summary of the changes in this version.
Second minor release of superspreading. This release enhances functions added in v0.1.0 and adds two new exported functions, and two new vignettes.
New features
- A new function (
calc_network_R()
) to estimate the reproduction number for heterogeneous networks and a vignette outlining use cases for the function from existing epidemiological literature is added (#71). probability_epidemic()
andprobability_extinct()
now have individual-level and population-level control in a joint framework (#70).proportion_*()
functions can now return proportion columns of the output<data.frame>
asnumeric
when the new argumentformat_prop
is set toFALSE
(#72).- A new design principles vignette to document package development is added (#68).
- Added a helper function (
ic_tbl()
) to improve model comparison tables (#65). probability_*()
functions now accept dynamic dots ({rlang} is added as a dependency) (#82).
Breaking changes
ind_control
andpop_control
arguments replacecontrol
andcontrol_type
arguments inprobability_contain()
; and the argument default fornum_init_infect
is removed (#70).- Changed
epidist
argument tooffspring_dist
to follow Epiverse style (affects several functions) (#64). - Argument in
proportion_transmission()
has been renamed fromsim
tosimulate
(#81).
Minor changes
- New package hex logo (#73).
- Updated continuous integration and package infrastructure (#67).
- Improved function documentation (#63).
- Optimisation now uses
optim()
by default (#82). - Testing suite now uses snapshot testing for regression tests (#84).
Bug fixes
- None to {superspreading} functions.
- Update {epiparameter} use in vignette and tests (#62).
Deprecated and defunct
- None
Reuse
Citation
BibTeX citation:
@online{epiverse-trace_development_team2024,
author = {Epiverse-TRACE development team, The},
title = {Superspreading V0.2.0},
date = {2024-01-29},
url = {https://epiverse-trace.github.io/posts/superspreading_v0.2.0/},
langid = {en}
}
For attribution, please cite this work as:
Epiverse-TRACE development team, The. 2024. “Superspreading
V0.2.0.” January 29, 2024. https://epiverse-trace.github.io/posts/superspreading_v0.2.0/.