Package index
Exported functions
readepi functions available to end-users
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dhis2_login() - Establish connection to a DHIS2 instance
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get_api_version() - Get DHIS2 API version
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get_data_elements() - Get all data elements from a specific DHIS2 instance
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get_organisation_units() - Get the organization units from a specific DHIS2 instance
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get_program_org_units() - Get organisation units that are associated with a given program
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get_program_stages() - Get program stages for one or more DHSI2 programs
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get_programs() - get all programs from a given specific DHIS2 instance
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get_tracked_entities() - Get tracked entity attributes, their corresponding IDs and event IDs
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login() - Establish a connection to the HIS of interest.
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lookup_table - Lookup table
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read_dhis2() - Import data from DHIS2
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read_rdbms() - Import data from relational database management systems (RDBMS).
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read_sormas() - Import data from SORMAS
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request_parameters - Request parameters
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show_tables() - Display the list of tables in a database
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sormas_get_api_specification() - Download the API specification file from SORMAS
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sormas_get_data_dictionary() - Download SORMAS data dictionary
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sormas_get_diseases() - Get the list of disease names from a SORMAS instance
Internal functions
readepi functions for internal use
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url_check() - Check if the value for the base_url argument has a correct structure
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sormas_get_api_specification() - Download the API specification file from SORMAS
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sormas_get_cases_data() - Get case data from a SORMAS instance
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sormas_get_contact_data() - Get contact data from SORMAS
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sormas_get_data_dictionary() - Download SORMAS data dictionary
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sormas_get_diseases() - Get the list of disease names from a SORMAS instance
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sormas_get_pathogen_data() - Get pathogen tests data from SORMAS
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sormas_get_persons_data() - Get personal data of cases from a SORMAS instance
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convert_to_date() - Convert numeric values into POSIXct,then into Date
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get_org_unit_as_long() - Transform the organisation units data frame from large to long format
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get_org_unit_levels() - Extract the DHSI2 organization unit's hierarchical levels.
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get_org_units() - Retrieve DHIS2 organization units, along with their IDs, names, parent IDs, and levels.
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check_org_unit() - Validate user-specified organisation unit ID or name.
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check_program() - Validate and retrieve program IDs
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get_entity_attributes() - Get the attribute names and ids of the tracked entities
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get_event_data() - Get event data from the newer DHIS2 versions (version >= 2.41)
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get_entity_data() - Get tracked entity attributes
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get_event_ids() - Get event IDs for specific tracked entity
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get_request_params() - Get the request query parameters for a specific API version
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server_fetch_data() - Fetch all or specific rows and columns from a table
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server_make_query() - Make an SQL query from a list of query parameters
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server_make_sql_expression() - Convert R expression into SQL expression
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server_make_subsetting_query() - Create a subsetting query
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query_check() - Check whether the user-provided query is valid
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fields_check() - Check whether the user-specified fields are valid