Plots force-of-infection central estimates

Plots force-of-infection central estimates

Usage

plot_foi_estimates(
  seromodel,
  serosurvey,
  alpha = 0.05,
  foi_df = NULL,
  foi_max = NULL,
  size_text = 11
)

Arguments

seromodel

stan_fit object obtained from sampling a model with fit_seromode

serosurvey

survey_year

Year in which the survey took place (only needed to plot time models)

age_min

Floor value of the average between age_min and age_max

age_max

The size of the sample

n_sample

Number of samples for each age group

n_seropositive

Number of positive samples for each age group

alpha

1 - alpha indicates the credibility level to be used

foi_df

Dataframe with columns

year/age

Year/Age (depending on the model)

foi

Force-of-infection values by year/age

foi_max

Max force-of-infection value for plotting

size_text

Size of text for plotting (base_size in ggplot2)

Value

ggplot object with estimated force-of-infection