Plot seroprevalence estimates on top of the serosurvey

Usage

plot_seroprevalence_estimates(
  seromodel,
  serosurvey,
  alpha = 0.05,
  size_text = 11,
  bin_serosurvey = FALSE,
  bin_step = 5
)

seromodel

stan_fit object obtained from sampling a model with fit_seromode

serosurvey

survey_year: Year in which the survey took place (only needed to plot time models)
age_min: Floor value of the average between age_min and age_max
age_max: The size of the sample
n_sample: Number of samples for each age group
n_seropositive: Number of positive samples for each age group

alpha

1 - alpha indicates the credibility level to be used

size_text

Size of text for plotting (base_size in ggplot2)

bin_serosurvey

If TRUE, serodata is binned by means of prepare_bin_serosurvey. Otherwise, age groups are kept as originally input.

bin_step

Integer specifying the age groups bin size to be used when bin_serosurvey is set to TRUE.

ggplot object with seroprevalence estimates and serosurveys plots