Summarise specified model

Usage

summarise_seromodel(
  seromodel,
  serosurvey,
  alpha = 0.05,
  par_loo_estimate = "elpd_loo",
  loo_estimate_digits = 1,
  central_estimate_digits = 2,
  rhat_digits = 2
)

Arguments

seromodel

stan_fit object obtained from sampling a model with fit_seromode

serosurvey

survey_year: Year in which the survey took place (only needed to plot time models)
age_min: Floor value of the average between age_min and age_max
age_max: The size of the sample
sample_size: Number of samples for each age group
n_seropositive: Number of positive samples for each age group

alpha

1 - alpha indicates the credibility level to be used

par_loo_estimate

Name of the loo estimate to be extracted. Available options are:

"elpd_loo": Expected log pointwise predictive density
"p_loo": Effective number of parameters
"looic": Leave-one-out cross-validation information criteria

For additional information refer to loo.

loo_estimate_digits

Number of loo estimate digits

central_estimate_digits

Number of central estimate digits

Value

A list summarising the specified model

model_name: Name of the model
elpd: elpd and its standard deviation
foi: Estimated foi with credible interval (for 'constant' model)
foi_rhat: foi rhat value (for 'constant' model)
seroreversion_rate: Estimated seroreversion rate
seroreversion_rate_rhat: Seroreversion rate rhat value