Package index • epiCo

Demographic module

age_risk(): Returns the specific rates associated with being infected given age and sex

describe_ethnicity(): Provides the sociological description of ethnicities in Colombia

describe_occupation(): Get ISCO-88 occupation labels from codes

get_age_risk_sex(): Auxiliary function to calculate the proportion by age according to the total population and sex

get_occupation_data(): Auxiliary function to obtain the information of the occupations

population_pyramid(): Returns the population pyramid of the consulted region

population_pyramid_plot(): Returns the population pyramid plot

occupation_plot(): Distribution plots for ISCO-88 occupation labels

occupation_plot_circular(): Distribution plots for ISCO-88 occupation labels

Endemic channel module

endemic_channel(): Create and return the endemic channel of a disease from an incidence object

Spatiotemporal module

neighborhoods(): Neighborhoods from real travel distances in Colombia

morans_index(): Calculate spatial correlation of given municipalities in an incidence_rate object.

Utils

epi_calendar(): Get the epidemiological calendar of a consulted year.

geometric_mean(): Returns the geometric mean of a vector of real numbers.

incidence_rate(): Extends an incidence class object with incidence rates estimations.

geometric_sd(): Returns the geometric standard deviation of a vector of real numbers.

Data

divipola_table: divipola_table

epi_data: epi_data

isco88_table: isco88_table