Function reference • epidemics

Model functions

model_default(): Model an SEIR-V epidemic with interventions

model_diphtheria(): Model a diphtheria outbreak using a compartmental ODE model

model_ebola(): Model an Ebola virus disease epidemic

model_vacamole(): Model leaky, two-dose vaccination in an epidemic using Vacamole

Intervention

as.intervention(): Convert a list to a intervention object

.intervention_on_rates(): Apply interventions to rate parameters

intervention() is_intervention() is_contacts_intervention() is_rate_intervention() c(<contacts_intervention>) c(<rate_intervention>): Create an intervention for an epidemic model

print(<intervention>) print(<contact_intervention>) print(<rate_intervention>): Print an object of the <intervention> super-class

Population

population() is_population(): Construct a new population for an epidemic model

print(<population>): Print a <population> object

Vaccination

as.vaccination(): Convert a list to a vaccination object

print(<vaccination>): Print a <vaccination> object

vaccination() is_vaccination() c(<vaccination>): Construct a new vaccination regime for an epidemic model

Helper functions

Functions to help with handling package classes and outputs.

epidemic_size(): Get the epidemic size

epidemic_peak(): Get the time and size of a compartment's highest peak

new_infections(): Get new infections over model time

Scenario comparison

Functions to help with comparing intervention scenarios.

outcomes_averted(): Calculate outcomes averted by interventions